fix variables #3
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| name: Kraken2 DB Release | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| tags: | ||
| - 'v*' | ||
| jobs: | ||
| build-and-release: | ||
| runs-on: ubuntu-latest | ||
| container: quay.io/biocontainers/kraken2:2.1.3--pl5321hdcf5f25_1 | ||
| strategy: | ||
| matrix: | ||
| include: | ||
| - ACC_ID: GCF_000001405.40 | ||
| ACC_NAME: GRCh38.p14 | ||
| LIBS: "bacteria,plasmid" | ||
| NAME: human_only | ||
| VERSION: 1.0.0 | ||
| - ACC_ID: GCF_000001405.40 | ||
| ACC_NAME: GRCh38.p14 | ||
| LIBS: "" | ||
| NAME: human_bact | ||
| VERSION: 1.0.0 | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v2 | ||
| - name: Build and compress database | ||
| if: github.event.release.tag_name == "v${VERSION}" | ||
|
Check failure on line 34 in .github/workflows/kraken2-db-release.yml
|
||
| run: | | ||
| bash build_custom_db.sh -i $ACC_ID -n $ACC_NAME -l "$LIBS" -o $NAME -t 4 | ||
| tar xvzf NAME | ||
| - name: Release database | ||
| if: github.event.release.tag_name == "v${VERSION}" | ||
| uses: actions/upload-artifact@v2 | ||
| with: | ||
| name: "${NAME}.tar.gz" | ||
| path: "${NAME}.tar.gz" | ||
| - name: Create release | ||
| if: github.event.release.tag_name == "v${VERSION}" | ||
| uses: actions/create-release@v1 | ||
| with: | ||
| tag_name: "v$VERSION" | ||
| release_name: "$NAME v$VERSION" | ||
| draft: false | ||
| prerelease: false | ||
| body: "Release of $NAME database version $VERSION" | ||
