updates versions #8
Workflow file for this run
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| name: Kraken2 DB Release | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - 'v*' | |
| jobs: | |
| build-and-release: | |
| runs-on: ubuntu-latest | |
| container: quay.io/biocontainers/kraken2:2.1.3--pl5321hdcf5f25_1 | |
| strategy: | |
| matrix: | |
| include: | |
| - ACC_ID: GCF_000001405.40 | |
| ACC_NAME: GRCh38.p14 | |
| LIBS: "bacteria,plasmid" | |
| NAME: human_only | |
| VERSION: 1.0.0 | |
| - ACC_ID: GCF_000001405.40 | |
| ACC_NAME: GRCh38.p14 | |
| LIBS: "" | |
| NAME: human_bact | |
| VERSION: 1.0.0 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Build and compress database | |
| if: github.event.release.tag_name == "v${{ matrix.VERSION }}" | |
| run: | | |
| bash build_custom_db.sh -i ${{ matrix.ACC_ID }} -n ${{ matrix.ACC_NAME }} -l "${{ matrix.LIBS }}" -o $${{ matrix.NAME }} -t 4 | |
| tar xvzf ${{ matrix.NAME }} | |
| - name: Release database | |
| if: github.event.release.tag_name == "v${{ matrix.VERSION }}" | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: "${{ matrix.NAME }}.tar.gz" | |
| path: "${{ matrix.NAME }}.tar.gz" | |
| - name: Create release | |
| if: github.event.release.tag_name == "v${{ matrix.VERSION }}" | |
| uses: actions/create-release@v1 | |
| with: | |
| tag_name: "v${{ matrix.VERSION }}" | |
| release_name: "${{ matrix.NAME }} v${{ matrix.VERSION }}" | |
| draft: false | |
| prerelease: false | |
| body: "Release of ${{ matrix.NAME }} database version ${{ matrix.VERSION }}" |