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add check fq
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jfouret committed May 22, 2024
1 parent 11e3935 commit ae52aa4
Showing 1 changed file with 6 additions and 2 deletions.
8 changes: 6 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -25,9 +25,13 @@ LABEL org.opencontainers.image.licenses="Apache-2.0"
ENV DEBIAN_FRONTEND=noninteractive

RUN apt-get update \
&& apt-get install -y --no-install-recommends zlib1g libgomp1 \
&& apt-get install -y --no-install-recommends zlib1g libgomp1 python3 python3-psutil wget ca-certificates \
&& wget https://raw.githubusercontent.com/nexomis/check_fastq/6d92856feb226f958e1203275f696b76bcf8e704/src/check_fastq.py \
&& mv check_fastq.py /usr/local/bin/check_fastq.py && chmod o+rx /usr/local/bin/check_fastq.py \
&& apt-get remove -y wget ca-certificates \
&& ln -sf /usr/bin/python3 /usr/local/bin/python \
&& rm -rf /var/lib/apt/lists/*

COPY --from=builder /Spring-1.1.1/build/spring /usr/local/bin/spring

ENTRYPOINT ["/usr/local/bin/spring"]
ENTRYPOINT [""]

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