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Update exclude
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trvrb committed Jun 18, 2023
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Showing 1 changed file with 48 additions and 24 deletions.
72 changes: 48 additions & 24 deletions defaults/exclude.txt
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Expand Up @@ -11027,6 +11027,7 @@ PAK/JRCGR_SCV-54_IBGE-06/2020
PAK/khi-w1-s5/2020
PAK/WA-UW-1729/2020
RUS/VIC01/2021
Russia/MOW-CSP-Cov-22_S48/2020
Senegal/SN-MBO-211915/2021
Thailand/63005380__2019/2020
UnitedArabEmirates/1046/2020
Expand All @@ -11037,6 +11038,7 @@ USA/LA-CDC-ASC210310458/2021
USA/MI-CDC-ASC210481590/2021
USA/MO-CDC-ASC210273594/2021
USA/ND-UNDGC-G2021_58_50/2021
USA/ND-UNDGC-G2021_124_26/2021
USA/ND-UNDGC-G2021_124_58/2021
USA/NMINBRE-ILLUMINA-WGS-215780/2020
USA/NM-NCGR-215861_IvcfC/2020
Expand Down Expand Up @@ -11091,6 +11093,10 @@ Comoros/SS10405/2022
Comoros/SS10411/2022
England/LSPA-3F0C6DD/2022
Gambia/16-186BV/2022
Henan/A85A89/2020
Henan/GPDC-0000005/2020
India/MZ-INSACOG-1526500005999/2020
Indonesia/JA-GS-EIJK-RSRM-0172/2020
Iraq/Erbil-10/2022
TrinidadandTobago/397052/2022
Vietnam/PIHCM_1540/2022
Expand Down Expand Up @@ -11130,6 +11136,7 @@ Lebanon/LAU-R84/2020
Lebanon/LAU-R89/2020
Lebanon/LAU-R95/2020
Lebanon/LAU-R97/2020
Lebanon/LAU-R99/2020
Lebanon/LAU-R104/2020
Lebanon/LAU-R128/2020
Lebanon/LAU-R130/2020
Expand Down Expand Up @@ -11182,30 +11189,12 @@ Qatar/DA-USAFSAM-S15231/2022
Bolivia/CBBA-PUC_MVL_3357/2022

# Omicrons with too early date
Argentina/PAIS-F0400/2021
Brazil/AM-IEC-182317/2021
Colombia/TOL-I453/2020
Congo/RC-409/2021
env/Austria/CeMM31016/2021
Eswatini/N22721/2021
USA/NJ-PHEL-V22024328/2021
Brazil/AM-IEC-182317/2021
KAZ/07_15/2021
Uganda/094/2021
Uganda/081/2021
Uganda/082/2021
Uganda/093/2021
Uganda/035/2020
IRQ/NAJAF/2021
Italy/PUG_UNIBA_APU-BA737/2021
Kazakhstan/NU-29_10/2021
PAK/271503/2021
PuertoRico/PR-UPRRP-1211/2021
USA/OK-PHL-0022663/2020
USA/OKPHL0022663/2020
USA/OR-TRACE-BENT-060321-1396/2021
USA/OR-TRACE-BENT-092321-1412/2021
USA/OR-TRACE-BENT-100721-1414/2021
USA/OR-TRACE-BENT-101421-1415/2021
USA/OR-TRACE-BENT-060321-1396/2021
USA/OR-TRACE-BENT-102121-1416/2021
France/IDF-LBZCentre-C11115K0640/2021
France/IDF-LBZCentre-C11115Z0093/2021
France/IDF-LBZCentre-YU2111150142/2021
Expand All @@ -11227,6 +11216,30 @@ France/IDF-LBZCentre-AC111150080/2021
France/IDF-LBZCentre-1111530063/2021
France/IDF-LBZCentre-C11115K0077/2021
France/IDF-LBZCentre-C11115K0686/2021
IRQ/NAJAF/2021
India/HR-618342786/2021
India/RJ-SMS-ICMR-INSACOG-TS-453/2021
Italy/PUG_UNIBA_APU-BA737/2021
Kazakhstan/NU-29_10/2021
KAZ/07_15/2021
Mali/168057/2021
PAK/271503/2021
PuertoRico/PR-UPRRP-1211/2021
Uganda/094/2021
Uganda/081/2021
Uganda/082/2021
Uganda/093/2021
Uganda/035/2020
USA/OK-PHL-0022663/2020
USA/OKPHL0022663/2020
USA/OR-TRACE-BENT-060321-1396/2021
USA/OR-TRACE-BENT-092321-1412/2021
USA/OR-TRACE-BENT-100721-1414/2021
USA/OR-TRACE-BENT-101421-1415/2021
USA/OR-TRACE-BENT-060321-1396/2021
USA/OR-TRACE-BENT-102121-1416/2021
USA/NJ-PHEL-V22024328/2021


USA/1014453982_6-8-2022/2022 # Strain has same BioSample accession (SAMN28961820) as USA/1014453982_6-15-2022/2022
Switzerland/AG-ETHZ-37212980/2022 # Strain has same BioSample accession (SAMEA110039407) as Switzerland/AG-ETHZ-37191344/2022
Expand Down Expand Up @@ -11400,14 +11413,27 @@ USA/UT-CDC-2-6185159/2022 # Strain has same BioSample accession (SAMN30051019) a
# Omicron 21L viruses that are over-diverged relative to sample date
TrinidadandTobago/171121/2022

# Misdated Alpha
Nigeria/CRL-013/2020

# Misdated Beta
Kyrgyzstan/NRL-52392/2020

# Misdated Eta
Libya/421067082/2020
Libya/421067088/2020
Libya/421067089/2020
Libya/421067094/2020
Libya/MZ054876/2020
Libya/MZ054887/2020
Senegal/28296/2020

# Misdated XBB-derived
Canada/PE-NML-611219/2022
Guatemala/10994-LNS/2022
Haiti/IMIS-2022220574/2022
Haiti/LNSP-74020007/2022
Sudan/0046/2022

# Misdated BA.5-derived
AmericanSamoa/AS-H2319334/2022
Expand All @@ -11432,7 +11458,5 @@ Lebanon/LAU-R126/2020
Lebanon/LAU-R178/2020
Lebanon/LAU-R350/2020
OX593060
USA/CO_c8ftxs_20200117/2020
Venezuela/Zul183/2020

# Misdated Beta
Kyrgyzstan/NRL-52392/2020

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