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24 Open 9 Closed
24 Open 9 Closed
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Issues list

Add staging module for Imaging Mass Cytometry data enhancement Improvement for existing functionality
#68 opened Nov 6, 2024 by MargotCh
@MargotCh
Add option to skip registration. enhancement Improvement for existing functionality
#64 opened Oct 25, 2024 by kbestak
Template update v3.0.2
#63 opened Oct 25, 2024 by kbestak
@kbestak
Implement Roadie for channel extraction enhancement Improvement for existing functionality
#62 opened Oct 25, 2024 by kbestak
@kbestak
Create proper test dataset for background subtraction enhancement Improvement for existing functionality
#59 opened Oct 8, 2024 by RobJY
1
Should registration output be published when tma_dearray is enabled? enhancement Improvement for existing functionality
#53 opened Aug 12, 2024 by jmuhlich
Add stardist into nf-core/mcmicro enhancement Improvement for existing functionality
#51 opened Aug 9, 2024 by migueLib
@migueLib
Expanding MCQuant nf-core module enhancement Improvement for existing functionality
#46 opened Jul 8, 2024 by LukasHats
@LukasHats
Add staging module for PhenoImager data enhancement Improvement for existing functionality
#45 opened Jul 5, 2024 by chiarasch
@chiarasch
Add Palom as a registration option
#44 opened Jul 2, 2024 by kbestak
5 tasks
@kbestak
Add a staging module for macsima data. enhancement Improvement for existing functionality
#40 opened Jun 26, 2024 by VictorDidier
@VictorDidier
Consider --illumination manual vs. checking for the presence of the dfp/ffp samplesheet columns enhancement Improvement for existing functionality
#38 opened May 20, 2024 by jmuhlich
Borrow ideas for how to design "restart" feature from sarek enhancement Improvement for existing functionality
#37 opened May 17, 2024 by jmuhlich
Module parameters enhancement Improvement for existing functionality
#36 opened May 13, 2024 by josenimo
Issues running Exemplar001 bug Something isn't working
#35 opened May 13, 2024 by josenimo
nf-validation isn't checking the files/directories in the samplesheets bug Something isn't working
#34 opened May 9, 2024 by RobJY
@RobJY
1
Mesmer in MacOS bug Something isn't working
#31 opened Apr 25, 2024 by josenimo
6
Design a mechanism to pass image pixel size to Mesmer and other tools bug Something isn't working
#30 opened Apr 24, 2024 by jmuhlich
5
input_sample code path does not explicitly sort input image filenames bug Something isn't working
#28 opened Apr 23, 2024 by jmuhlich
@RobJY
1
basicpy output should be split up by sample ID bug Something isn't working
#27 opened Apr 11, 2024 by jmuhlich
@RobJY
1
move custom validation to groovy enhancement Improvement for existing functionality
#25 opened Mar 19, 2024 by RobJY
@RobJY
4
add darkfield correction flag to default basicpy args enhancement Improvement for existing functionality
#21 opened Mar 18, 2024 by jmuhlich
@RobJY
Should markers.csv have a per-cycle channel number? enhancement Improvement for existing functionality
#17 opened Mar 15, 2024 by jmuhlich
read images and markers.csv from SampleSheet.csv
#6 opened Oct 16, 2023 by VictorDidier
@VictorDidier
ProTip! no:milestone will show everything without a milestone.