add missing script #2
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches_ignore: [] | |
| jobs: | |
| Linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Lint workflow | |
| uses: snakemake/snakemake-github-action@v1.5.3 | |
| with: | |
| directory: . | |
| snakefile: workflow/Snakefile | |
| args: "--lint" | |
| Testing: | |
| runs-on: ubuntu-latest | |
| needs: Linting | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Checkout submodules | |
| uses: textbook/git-checkout-submodule-action@2.0.0 | |
| - name: Test workflow (local test data) | |
| uses: snakemake/snakemake-github-action@v1.5.3 | |
| with: | |
| directory: .test | |
| snakefile: workflow/Snakefile | |
| args: "--use-conda --show-failed-logs -j 10 --conda-cleanup-pkgs" | |
| - name: Test report | |
| uses: snakemake/snakemake-github-action@v1.5.3 | |
| with: | |
| directory: .test | |
| snakefile: workflow/Snakefile | |
| args: "--report report.zip" |