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@gfudenberg gfudenberg released this 24 Oct 21:49
· 124 commits to master since this release
v0.5.2
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Learn about vigilant mode.

API changes

  • remove custom bad_bins from expected & eigdecomp #336
  • coverage can store total cis counts in the cooler, and sampling can use cis counts #332
  • can now calculate coverge for balanced data #385
  • new drop_track_na argument for align_track_with_cooler, allows calcultions that that missing data in tracks as absent #360
  • multi-thread insulation by chromosome (TODO: by chunk)
  • Virtual 4C tool #378

CLI changes

  • CLI tool for coverage()

Documentation

  • snipping documentation
  • dots tutorial
  • CLI tutorial

Maintenance

  • Dropped support for Python 3.7 (due to Pandas compatability issues)

  • Added support for Python 3.10

  • Minor bugfixes and compatibility updates

    • Pandas compatibility, pinned above 1.5.1
    • bioframe compatability
    • scikit-learn, pinned above >=1.1.2
    • saddle binedges, value limits #361
    • pileup CLI bugfix for reading features

Other

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