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Update to Viash 0.9 #675

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Update to Viash 0.9

Update to Viash 0.9 #675

Triggered via pull request July 2, 2024 12:49
@rcannoodrcannood
synchronize #71
viash0.9
Status Failure
Total duration 8m 3s
Artifacts –

test.yml

on: pull_request
build  /  run_ci_check_job
4s
build / run_ci_check_job
build  /  list
1m 2s
build / list
Matrix: build / viash_test
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30 errors and 2 warnings
build / viash_test (compute_pseudobulk, process_dataset, 1.1.0, Arguments, file, --input, resources/neuri...
Process completed with exit code 1.
build / viash_test (filter_vars, process_dataset, 1.1.0, Arguments, file, --input, resources/neurips-2023...
Process completed with exit code 1.
build / viash_test (mean_rowwise_error, metrics, 1.1.0, Arguments, file, --de_test_h5ad, DE test, Differe...
Process completed with exit code 1.
build / viash_test (lgc_ensemble, methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Differentia...
Process completed with exit code 1.
build / viash_test (run_stability_analysis, workflows, 1.1.0, Inputs, file, --sc_counts, Single Cell Coun...
Process completed with exit code 1.
build / viash_test (jn_ap_op2, methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Differential e...
Process completed with exit code 1.
build / viash_test (mean_across_compounds, control_methods, 1.1.0, Arguments, file, --de_train_h5ad, DE t...
Process completed with exit code 1.
build / viash_test (run_benchmark, workflows, 1.1.0, Inputs, file, --de_train_h5ad, DE train, Differentia...
Process completed with exit code 1.
build / viash_test (zeros, control_methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Differenti...
Process completed with exit code 1.
build / viash_test (convert_h5ad_to_parquet, process_dataset, 1.1.0, Arguments, file, --input_train, reso...
Process completed with exit code 1.
build / viash_test (sample, control_methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Different...
Process completed with exit code 1.
build / viash_test (bootstrap, process_dataset, 1.1.0, Inputs, file, --input, resources/neurips-2023-raw/...
Process completed with exit code 1.
build / viash_test (filter_obs, process_dataset, 1.1.0, Arguments, file, --input, resources/neurips-2023-...
Process completed with exit code 1.
build / viash_test (run_limma, process_dataset, 1.1.0, Arguments, file, --input, resources/datasets/neuri...
Process completed with exit code 1.
build / viash_test (mean_outcome, control_methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Dif...
Process completed with exit code 1.
build / viash_test (transformer_ensemble, methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Dif...
Process completed with exit code 1.
build / viash_test (nn_retraining_with_pseudolabels, methods, 1.1.0, Arguments, file, --de_train_h5ad, DE...
Process completed with exit code 1.
build / viash_test (lgc_ensemble_predict, methods, 1.1.0, Arguments, file, --train_data_aug_dir, true, tr...
Process completed with exit code 1.
build / viash_test (ground_truth, control_methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Dif...
Process completed with exit code 1.
build / viash_test (generate_id_map, process_dataset, 1.1.0, Arguments, file, --de_test_h5ad, resources/d...
Process completed with exit code 1.
build / viash_test (process_dataset, workflows, 1.1.0, Arguments, file, --sc_counts, Single Cell Counts, ...
Process completed with exit code 1.
build / viash_test (lgc_ensemble_prepare, methods, 1.1.0, Arguments, file, --de_train_h5ad, true, true, f...
Process completed with exit code 1.
build / viash_test (lgc_ensemble_direct, methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Diff...
Process completed with exit code 1.
build / viash_test (mean_across_celltypes, control_methods, 1.1.0, Arguments, file, --de_train_h5ad, DE t...
Process completed with exit code 1.
build / viash_test (add_uns_metadata, process_dataset, 1.1.0, Arguments, file, --input, resources/neurips...
Process completed with exit code 1.
build / viash_test (scape, methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Differential expre...
Process completed with exit code 1.
build / viash_test (convert_kaggle_h5ad_to_parquet, process_dataset, 1.1.0, Inputs, file, --input_train, ...
Process completed with exit code 1.
build / viash_test (lgc_ensemble_train, methods, 1.1.0, Arguments, file, --train_data_aug_dir, true, true...
Process completed with exit code 1.
build / viash_test (mean_rowwise_correlation, metrics, 1.1.0, Arguments, file, --de_test_h5ad, DE test, D...
Process completed with exit code 1.
build / viash_test (pyboost, methods, 1.1.0, Arguments, file, --de_train_h5ad, DE train, Differential exp...
Process completed with exit code 1.
build / list
Unable to find merge base between 4b825dc642cb6eb9a060e54bf8d69288fbee4904 and 95dcc63c124ab358ce7a7c48f916c51d55181172
build / list
Set 'fetch_additional_submodule_history: true' to fetch additional submodule history for: common