Repositories list

• emapper2gbk

  Public
  Convert GFF, fastas, annotation table and species name into Genbank.

  Python

  •

  GNU Lesser General Public License v3.0

  •10•14•8•0•Updated Mar 11, 2025Mar 11, 2025

• metage2metabo

  Public
  From annotated genomes to metabolic screening in large scale microbiotas

  bioinformaticsbioinformatics-pipelinemetabolic-models

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •7•56•6•0•Updated Mar 10, 2025Mar 10, 2025

• esmecata

  Public
  From taxonomic affiliations to annotated consensus proteomes using UniProt database.

  protein-sequencesuniprottaxon+ 2proteomesfunction-estimation

  Python

  •

  GNU General Public License v3.0

  •1•3•1•0•Updated Mar 7, 2025Mar 7, 2025

• prolipipe

  Public
  The prolific pipeline is about genome annotation and metabolic pathway reconstruction. From .fasta genomes, it enables to find if strains of bacteria are theorically able to produce metabolites

  Python

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Mar 7, 2025Mar 7, 2025

• mpwt

  Public
  Pathway Tools multiprocessing wrapper (for PathoLogic).

  multiprocessingmetabolic-networkpathway-tools

  Python

  •

  GNU Lesser General Public License v3.0

  •0•14•5•0•Updated Dec 22, 2024Dec 22, 2024

• aucome

  Public
  Automatic Comparison of Metabolism

  Python

  •

  GNU General Public License v3.0

  •0•6•2•0•Updated Nov 13, 2024Nov 13, 2024

• MeneVal

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• padmet

  Public
  Python library for hAndling metaData of METabolism.

  metabolic-network

  Python

  •

  GNU General Public License v3.0

  •2•6•3•0•Updated Oct 30, 2024Oct 30, 2024

• Ontosunburst

  Public
  Sunburst representation of ontologies

  Python

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Aug 29, 2024Aug 29, 2024

• aureme

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•3•0•Updated Apr 24, 2024Apr 24, 2024

• HoloInteract

  Public
  Study interactions hosts and microorganisms at metabolic level.

  HTML

  •

  MIT License

  •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• padmet-utils

  Public
  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Mar 12, 2024Mar 12, 2024

• aucomana

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 16, 2024Feb 16, 2024

• wiki-metabolic-network

  Public
  PHP

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated May 10, 2023May 10, 2023

• mpwt-docker

  Public
  A dockerfile for multiprocessing Pathway-Tools.

  pathway-tools

  Dockerfile

  •1•3•0•0•Updated Apr 27, 2023Apr 27, 2023

• mpwt-singularity

  Public
  Singularity recipe for Pathway-Tools and mpwt.

  pathway-tools

  Singularity

  •0•0•0•0•Updated Apr 27, 2023Apr 27, 2023

• aureme_docker

  Public
  Makefile

  •0•1•2•0•Updated Oct 26, 2020Oct 26, 2020