HelmholtzAI-consultants-HMGU

All

22 repositories

oligo-designer-toolsuite
Public
Develop custom oligo design pipelines.
probe-design spatial-transcriptomics oligo-design bioinformatics
Python
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MIT License
•3•15•4•0•Updated Dec 23, 2024Dec 23, 2024
fg-clustering
Public
Explainability for Random Forest Models.
random-forest explainable-ai xai
Jupyter Notebook
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MIT License
•7•26•2•0•Updated Dec 20, 2024Dec 20, 2024
oligo-designer-toolsuite-AI-filters
Public
AI plug-ins for the Oligo Designer Toolsuite package
Python
•1•2•0•0•Updated Dec 19, 2024Dec 19, 2024
napari-organoid-counter
Public
A napari plugin for counting organoids from brightfield microscopy images with deep learning
Python
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MIT License
•2•9•7•0•Updated Dec 5, 2024Dec 5, 2024
Prompt-Engineering-LLMs-Course
Public
Python
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MIT License
•0•4•0•0•Updated Dec 3, 2024Dec 3, 2024
Colorectal-Cancer-Organoids-Detection
Public
Instance segmentation tool to detect alive colorectal cancer organoids
Python
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MIT License
•1•1•0•0•Updated Nov 26, 2024Nov 26, 2024
DimRed-Course
Public
Material for the dimensionality reduction course
Jupyter Notebook
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Creative Commons Attribution 4.0 International
•1•3•0•0•Updated Sep 26, 2024Sep 26, 2024
XAI-Tutorials
Public template
Self-explanatory tutorials for different model-agnostic and model-specific XAI methods
xai model-agnostic-explanations model-specific-explanations tutorial
Jupyter Notebook
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Creative Commons Attribution 4.0 International
•21•49•0•0•Updated Sep 24, 2024Sep 24, 2024
data-centric-platform
Public
A tool for all-kinds segmentation in microscopy imaging which encourages data centric approaches
Python
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BSD 3-Clause "New" or "Revised" License
•5•8•12•1•Updated Aug 28, 2024Aug 28, 2024
EffiDict
Public
Jupyter Notebook
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MIT License
•0•0•4•0•Updated Jun 5, 2024Jun 5, 2024
AURORA
Public
WARNING: This code base is no longer supported. It still works, but we recommended using [BrainLes AURORA](https://github.com/BrainLesion/AURORA/) instead, which offers much more flexibility in a convenient PyPI package.
segmentation metastasis
Python
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GNU Affero General Public License v3.0
•0•1•0•0•Updated Apr 17, 2024Apr 17, 2024
Echo2Pheno
Public
A deep learning application to uncover echocardiographic phenotypes
deep-learning statistical-analysis echocardiography
Jupyter Notebook
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MIT License
•2•2•0•0•Updated Nov 22, 2023Nov 22, 2023
Quicksetup-ai
Public
A flexible template, as a quick setup for deep learning projects in pytorch-lightning
pytorch-lightning deep-learning
Python
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MIT License
•7•44•9•0•Updated Oct 26, 2023Oct 26, 2023
DL-lecture-tutorials
Public
Crash course on Introduction to AI and its medical applications. Tutorials with focus on intro to DL, overfitting, class imbalance.
pytorch tutorial deep-learning
Jupyter Notebook
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Creative Commons Attribution 4.0 International
•1•0•0•0•Updated Jun 21, 2023Jun 21, 2023
EMcapsulins_segmentation
Public
segmentation models for EMcapsulins segmentation
mac semantic segmentation emcapsulin
Python
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GNU Affero General Public License v3.0
•2•2•0•0•Updated May 12, 2023May 12, 2023
automatedTesting
Public
Jupyter Notebook
•5•0•0•0•Updated Dec 14, 2022Dec 14, 2022
PySDDR
Public
A python package for semi-structured deep distributional regression
explainable-ml distributional-regression multi-modal-data
Jupyter Notebook
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MIT License
•8•21•0•0•Updated Dec 9, 2022Dec 9, 2022
ArtsyML
Public
Code for blending people in images or videos with biological images using style transfer.
video-processing people-segmentation style-transfer
Python
•4•2•0•0•Updated Nov 21, 2022Nov 21, 2022
Automatic-Cell-Counter
Public
A GUI based on napari for counting cells automatically in cell migration experiments
image-processing imaging napari
Python
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MIT License
•10•43•1•0•Updated Nov 21, 2022Nov 21, 2022
pytorch_fnet
Public
A workflow for the generation of cell infection markers from brightfield microscopy images
deep-learning image-translation microscopy-images
Jupyter Notebook
•61•0•0•0•Updated Nov 21, 2022Nov 21, 2022
lightning-hydra-template
Public archive
PyTorch Lightning + Hydra. A very user-friendly template for rapid, scalable and reproducible ML experimentation with best practices. ⚡🔥⚡
Python
•661•0•0•0•Updated Mar 6, 2022Mar 6, 2022
Malis-Loss
Public
Tensorflow and Pytorch Version of Malis Loss
tensorflow pytorch
Jupyter Notebook
•3•17•0•1•Updated Nov 8, 2020Nov 8, 2020