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    15 repositories

    • vcztools

      Public
      Partial reimplementation of bcftools for VCF Zarr
      Python
      •
      Apache License 2.0
      •5•12•31•0•Updated Mar 25, 2025Mar 25, 2025

    • bio2zarr

      Public
      Convert bioinformatics file formats to Zarr
      Python
      •
      Apache License 2.0
      •8•32•35•2•Updated Mar 20, 2025Mar 20, 2025

    • vcf-zarr-spec

      Public
      VCF Zarr Specification
      Apache License 2.0
      •2•12•16•0•Updated Mar 18, 2025Mar 18, 2025

    • SAIGE-VCZ

      Public
      SAIGE extension that supports VCF Zarr
      C++
      •
      GNU General Public License v3.0
      •27•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • vcf-zarr-publication

      Public
      Manuscript and associated scripts for vcf-zarr publication
      Jupyter Notebook
      •
      Other
      •11•2•3•0•Updated Mar 5, 2025Mar 5, 2025

    • sgkit

      Public
      Scalable genetics toolkit
      gwasgeneticspydatapopgenstatistical-geneticsstatgen
      Python
      •
      Apache License 2.0
      •33•252•217•9•Updated Feb 11, 2025Feb 11, 2025

    • sgkit-benchmarks-asv

      Public
      JavaScript
      •1•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • hypothesis-vcf

      Public
      Hypothesis strategy for generating VCF
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jan 29, 2025Jan 29, 2025

    • sgkit-publication

      Public
      Sgkit publication repository
      TeX
      •5•5•19•0•Updated Mar 6, 2024Mar 6, 2024

    • sgkit-publication-backup

      Public
      Backup of sgkit publication repository, original manubot version
      HTML
      •
      Other
      •5•0•0•0•Updated Feb 27, 2023Feb 27, 2023

    • sgkit-bgen

      Public archive
      NOW ARCHIVED! BGEN IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.
      Python
      •
      Apache License 2.0
      •3•0•12•0•Updated Oct 6, 2020Oct 6, 2020

    • sgkit-plink

      Public archive
      NOW ARCHIVED! PLINK IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.
      Python
      •
      Apache License 2.0
      •4•0•8•0•Updated Sep 17, 2020Sep 17, 2020

    • sgkit-vcf

      Public archive
      NOW ARCHIVED! VCF IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.
      Python
      •
      Apache License 2.0
      •2•0•1•0•Updated Sep 15, 2020Sep 15, 2020

    • .github

      Public
      Default community health files
      0•0•0•0•Updated Aug 10, 2020Aug 10, 2020

    • sgkit-requirements

      Public
      Repo for collecting requirements.
      Jupyter Notebook
      •
      MIT License
      •1•6•8•1•Updated Jul 22, 2020Jul 22, 2020