snap-stanford

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81 repositories

BioDiscoveryAgent
Public
BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
Python
•4•24•1•0•Updated Nov 18, 2024Nov 18, 2024
UCE
Public
UCE is a zero-shot foundation model for single-cell gene expression data
Python
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MIT License
•28•165•2•2•Updated Nov 14, 2024Nov 14, 2024
relbench
Public
RelBench: Relational Deep Learning Benchmark
Python
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MIT License
•40•217•3•1•Updated Nov 14, 2024Nov 14, 2024
ogb-web
Public
OGB website
SCSS
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MIT License
•0•0•0•0•Updated Nov 4, 2024Nov 4, 2024
llm-social-network
Public
Jupyter Notebook
•2•10•0•0•Updated Nov 3, 2024Nov 3, 2024
precice
Public
Jupyter Notebook
•1•1•0•0•Updated Oct 29, 2024Oct 29, 2024
stark
Public
STaRK: Benchmarking LLM Retrieval on Textual and Relational Knowledge Bases (NeurIPS D&B 2024)
nlp information-retrieval graph knowledge-base semi-structured-data multimodal llm
Python
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MIT License
•37•306•1•1•Updated Oct 24, 2024Oct 24, 2024
planet
Public
PlaNet: Predicting population response to drugs via clinical knowledge graph
knowledge-graph language-model graph-neural-networks biomedicine
Python
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MIT License
•3•18•0•0•Updated Oct 1, 2024Oct 1, 2024
supply-chains
Public
Jupyter Notebook
•0•1•1•1•Updated Aug 26, 2024Aug 26, 2024
GEARS
Public
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
Python
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MIT License
•41•210•12•2•Updated Aug 19, 2024Aug 19, 2024
ViRel
Public
ViRel: Unsupervised Visual Relations Discovery with Graph-level Analogy
machine-learning representation-learning unsupervised-learning reasoning graph-neural-networks graph
Python
•5•8•2•1•Updated Aug 10, 2024Aug 10, 2024
relbench-user-study
Public
Python
•1•2•0•0•Updated Aug 7, 2024Aug 7, 2024
SATURN
Public
Jupyter Notebook
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MIT License
•17•108•3•0•Updated Jul 3, 2024Jul 3, 2024
neural-subgraph-learning-GNN
Public
Jupyter Notebook
•65•341•20•3•Updated Jun 25, 2024Jun 25, 2024
MLAgentBench
Public
Python
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MIT License
•35•247•2•2•Updated Jun 19, 2024Jun 19, 2024
ipf-network-inference
Public
Jupyter Notebook
•1•0•0•0•Updated Jun 18, 2024Jun 18, 2024
plato
Public
Python
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MIT License
•2•66•1•0•Updated Mar 22, 2024Mar 22, 2024
ogb
Public
Benchmark datasets, data loaders, and evaluators for graph machine learning
deep-learning datasets graph-neural-networks graph-machine-learning
Python
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MIT License
•402•1.9k•25•5•Updated Feb 13, 2024Feb 13, 2024
UCE_decoder
Public
Jupyter Notebook
•1•0•0•0•Updated Feb 2, 2024Feb 2, 2024
le_pde
Public
LE-PDE accelerates PDEs' forward simulation and inverse optimization via latent global evolution, achieving significant speedup with SOTA accuracy
accelerate pde latent-space surrogate-models inverse-optimization deep-learning
Jupyter Notebook
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MIT License
•5•22•0•0•Updated Jan 30, 2024Jan 30, 2024
lamp
Public
[ICLR23] First deep learning-based surrogate model that jointly learns the evolution model and optimizes computational cost via remeshing
reinforcement-learning physics-simulation multi-resolution controllable learned-simulation mesh-based
Python
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MIT License
•5•37•0•0•Updated Jan 30, 2024Jan 30, 2024
AutoTransfer
Public
Python
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Other
•0•1•0•0•Updated Jan 29, 2024Jan 29, 2024
caml
Public
Python
•0•4•2•0•Updated Jan 23, 2024Jan 23, 2024
snap
Public
Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.
C++
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Other
•800•2.2k•84•13•Updated Dec 10, 2023Dec 10, 2023
exposure-segregation
Public
Python
•0•12•0•0•Updated Nov 28, 2023Nov 28, 2023
deepsnap
Public
Python library assists deep learning on graphs
deep-learning pytorch graph-neural-networks
Python
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MIT License
•56•550•23•1•Updated Nov 11, 2023Nov 11, 2023
GraphGym
Public
Platform for designing and evaluating Graph Neural Networks (GNN)
Python
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Other
•186•1.7k•19•5•Updated Nov 10, 2023Nov 10, 2023
roland
Public
Jupyter Notebook
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Other
•23•127•6•0•Updated Nov 5, 2023Nov 5, 2023
tuneup
Public
Python
•0•0•0•0•Updated Nov 4, 2023Nov 4, 2023
conformalized-gnn
Public
Uncertainty Quantification over Graph with Conformalized Graph Neural Networks (NeurIPS 2023)
graph calibration uncertainty-quantification conformal-prediction graph-neural-networks gnn
Python
•6•72•0•0•Updated Sep 27, 2023Sep 27, 2023