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Welcome to the LepMak3r wiki!

LepMak3r was created to be a much more sensibly modular update/alternative to LepMapp3r, which itself is a wrapper for LepMap3 by Pasi Rastas. As I'm sure you've already guessed, the name is derived from LepMap3 ("Lep_3") and Snakemake ("Make"). Since LepMap3 itself is composed of several Java modules, it only made sense to combine them into a deterministic modular workflow. Much like LepMapp3r, LepMak3r does not include every module and option available to LepMap3, but the improved legibility and modularity of Snakemake framework makes it a lot easier to adapt and modify to your needs.