LepAnchor Overview

Snakemake lets you output directed acyclic graphs of the workflow, so here is the simplified one. It's immediately obvious that Lep-Anchor has a lot more moving parts than Lep-Map3. For all the dirty details, have a look at the detailed workflow. You can generate one yourself with the command

snakemake --snakefile rules/LepAnchor.smk --directory . --rulegraph | dot -Tpng > rulegraph.png