Skip to content

Add R to the installed picard modules#282

Merged
EddieLF merged 1 commit intomainfrom
add_r_to_picard
Feb 26, 2026
Merged

Add R to the installed picard modules#282
EddieLF merged 1 commit intomainfrom
add_r_to_picard

Conversation

@EddieLF
Copy link
Contributor

@EddieLF EddieLF commented Feb 26, 2026

R is required for running some Picard tools, like CollectMultipleMetrics

E.g. attempting to run without R installed:
https://batch.hail.populationgenomics.org.au/batches/1126298/jobs/2

R is not installed on this machine. It is required for creating the chart.

@github-actions
Copy link

🐳 Expected Tags

Some Dockerfiles have been modified in this PR. New tags are expected to be deployed.
The table below shows what the tags are expected to be on merging this PR.

Name Tag
picard 3.4.0-3

Copy link
Contributor

@MattWellie MattWellie left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

is this all it needs? Maybe vanilla R is all it takes, might come back and complain it needs some extra graphing libraries... hopefully not 🤞

@EddieLF EddieLF merged commit 0d79f41 into main Feb 26, 2026
7 checks passed
@EddieLF EddieLF deleted the add_r_to_picard branch February 26, 2026 07:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants