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Phylogenetic and Evolutionary Analysis
Rajan edited this page Aug 19, 2022
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RAxML: Phylogenetic Tree Construction (Maximum Likelihood).
RAxML-NG: Phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.
IQ-TREE: Phylogenomic inference
SplitsTree: Compute Phylogenetic Networks.
FigTree: Tool to graphically view phylogenetic trees.
iTOL: Online tool for phylogenetic tree display and annotation.
HyPhy: Analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning.
BEAST-2: Estimates rooted, time-measured phylogenies using strict or relaxed molecular clock models