Utility Tools

Tmux: Terminal multiplexer

R-Base: R package for Linux & Conda.

Snakemake: Workflow management system

Nextflow: Workflow management system

Terminator: Open-source terminal emulator (run multiple terminals).

Vim: Text editor for terminal.

Miniconda: Package management system and environment management system.

InteractiVenn: Tool to create Venn diagrams.

create_env: Method for creating an environment in conda.

Django: Python based web framework

PDFtk: PDF document manipulation

Streamlit: Building and sharing of data apps

VIA: Manual annotation of image for DL based segmentation task

Detectron2: Image detection and segmentation

Docker: Help build, share, and run container applications