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Issues: reactome/add-links

23 Open 35 Closed
23 Open 35 Closed
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Issues list

ENSEMBL files not downloading now that the database names changed in gk_central bug
#215 opened Nov 17, 2023 by adamjohnwright
@jweiser
CosmicMutantExport Depricated need to change code bug
#214 opened Nov 17, 2023 by adamjohnwright
Add links to chebi through guide2pharmacology enhancement
#213 opened Oct 10, 2023 by adamjohnwright
@jweiser
Dockerize GO-CAM generation / validation enhancement
#212 opened Sep 23, 2023 by adamjohnwright
@adamjohnwright
check over pull request clean up
#207 opened Jul 18, 2023 by adamjohnwright
1
@jweiser
COSMIC array our of bound error bug
#205 opened Jul 4, 2023 by adamjohnwright
@jweiser
Significant number of output about invalid http header with insertion
#193 opened Sep 2, 2022 by adamjohnwright
Error when downloading open_target_list.csv.gz bug
#192 opened Sep 2, 2022 by adamjohnwright
@jweiser
GTP Ligand and Target files have a extra commented row above table that needs to be skipped bug
#191 opened Sep 1, 2022 by adamjohnwright
@jweiser
Do not look up ReferenceDatabases by alias
#169 opened Jun 7, 2021 by SolomonShorser-OICR
ZFIN & Xenbase reference creation does not work on Release server bug
#157 opened Feb 12, 2021 by cookersjs
4
ComplexPortal - handle recursive data structures? ComplexPortal enhancement
#151 opened Jan 13, 2021 by SolomonShorser-OICR
Make createIdentifiers parameter type a List instead of T low priority Low priority items.
#148 opened Nov 19, 2020 by cookersjs
10
Commenting out FileProcessor but not corresponding ReferenceCreator terminates program bug
#138 opened Apr 14, 2020 by cookersjs
@SolomonShorser-OICR
OpenTargets file now has UniProt IDs - use them? OpenTargets
#116 opened Aug 19, 2019 by SolomonShorser-OICR
@SolomonShorser-OICR
FlyBase file name changes every 3 months -- need a way to handle this automatically enhancement
#114 opened Aug 18, 2019 by jweiser
@SolomonShorser-OICR
KEGG - fitler mapping list KEGG Issues related to working with the KEGG external database.
#89 opened Sep 13, 2018 by SolomonShorser-OICR
@SolomonShorser-OICR
Investigate using KEGG database 162345 KEGG Issues related to working with the KEGG external database.
#88 opened Sep 13, 2018 by SolomonShorser-OICR
1
AddLinks wipes files downloaded from previous run
#81 opened Aug 27, 2018 by cookersjs
3
Compare with previous database and report enhancement
#71 opened Mar 15, 2018 by SolomonShorser-OICR
User-configurable ZINC timeout enhancement
#64 opened Aug 24, 2017 by SolomonShorser-OICR
@SolomonShorser-OICR
PRO name duplicated
#63 opened Aug 24, 2017 by SolomonShorser-OICR
@SolomonShorser-OICR
Pass more data in from command line enhancement
#58 opened Jul 26, 2017 by SolomonShorser-OICR
@SolomonShorser-OICR
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