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262 followers · 189 following

Achievements

Achievement: Pair Extraordinairex4Achievement: YOLOAchievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex4Achievement: YOLOAchievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@staphopia @Read-Lab-Confederation @conda-forge @bioconda @MetaSUB @bactopia

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rpetit3/README.md

Yo! 👋

Hello, I'm Robert Petit (puh-teet, not pet-it)! I currently work as a bioinformatician in the Wyoming Public Health Laboratory. In my personal time I am continuing to develop Bactopia, a bacterial genome analysis pipeline.

  • 💻 Things I use daily: Nextflow, Conda, Unix, Python
  • 💬 Ask me about: Bactopia and Bioconda
  • ⚡ Fun fact: I'm the third Robert, in a line of Bobs
  • 🔥 Hot take: Pecan is pronounced PEE-CAN!

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  1. bactopia/bactopia Public

    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow 445 74

  2. camlhmp Public

    🐪Classification through yAML Heuristic Mapping Protocol 🐪

    Python 9 2

  3. dragonflye Public

    🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads

    Perl 122 11

  4. fastq-dl Public

    Download FASTQ files from SRA or ENA repositories.

    Python 309 25

  5. fastq-scan Public

    Output FASTQ summary statistics in JSON format

    C++ 29 1

  6. sccmec Public

    A tool for typing SCCmec cassettes in assemblies

    Python 4

605 contributions in the last year

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Activity overview

Contributed to bioconda/bioconda-recipes, bactopia/bactopia, rpetit3/camlhmp and 40 other repositories
Loading A graph representing rpetit3's contributions from March 17, 2024 to March 21, 2025. The contributions are 68% commits, 22% code review, 5% issues, 5% pull requests.

Contribution activity

March 2025

Created 5 commits in 3 repositories
Created 1 repository
Opened 2 pull requests in 1 repository
rpetit3/official_joke_api 1 open 1 merged
Reviewed 2 pull requests in 2 repositories
  • Checkm2
    This contribution was made on Mar 10

Created an issue in jodyphelan/TBProfiler that received 5 comments

create_snpeff_directories(db_dir) fails inside a container

Hi @jodyphelan, Giving a heads up on the biocontainer build for tb-profiler. It currently tries to write snpeff related files into /usr/local/share…

5 comments
Opened 2 other issues in 2 repositories
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