add params into the YAML update readme

Author: rpetit3

CHANGELOG

@@ -1,6 +1,6 @@
 # Changelog
 
-## v1.2.0 rpetit3/sccmec "" 2024/08/25
+## v1.2.0 rpetit3/sccmec "Newman" 2024/08/25
 
 - Utilize both targets and full cassettes for classification
 - update default thresholds based on `camlhmp-blast-thresholds`
@@ -17,28 +17,3 @@
 ## v1.0.0 rpetit3/sccmec "MRSA" 2024/04/30
 
 - Initial release
-
-@click.option(
-    "--min-targets-pident",
-    default=90,
-    show_default=True,
-    help="Minimum percent identity of targets to count a hit",
-)
-@click.option(
-    "--min-targets-coverage",
-    default=80,
-    show_default=True,
-    help="Minimum percent coverage of targets to count a hit",
-)
-@click.option(
-    "--min-regions-pident",
-    default=85,
-    show_default=True,
-    help="Minimum percent identity of regions to count a hit",
-)
-@click.option(
-    "--min-regions-coverage",
-    default=83,
-    show_default=True,
-    help="Minimum percent coverage of regions to count a hit",
-)