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Update and fixes in dwiml_create_hdf5 and associated doc #222

Merged
merged 23 commits into from
Mar 4, 2024
Merged

Update and fixes in dwiml_create_hdf5 and associated doc #222

merged 23 commits into from
Mar 4, 2024

Commits on Feb 1, 2024

  1. Update hdf5 doc

    @EmmaRenauld
    EmmaRenauld committed Feb 1, 2024
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  2. Move std mask option to config file

    @EmmaRenauld
    EmmaRenauld committed Feb 1, 2024
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  3. Add util script to print info on hdf5

    @EmmaRenauld
    EmmaRenauld committed Feb 1, 2024
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  4. Fixes in connectivity_from_labels

    @EmmaRenauld
    EmmaRenauld committed Feb 1, 2024
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  5. Add missing tests

    @EmmaRenauld
    EmmaRenauld committed Feb 1, 2024
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  6. Improve figure in both connectivity scripts

    @EmmaRenauld
    EmmaRenauld committed Feb 1, 2024
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  7. Final improvements connectivity_from_labels

    @EmmaRenauld
    EmmaRenauld committed Feb 1, 2024
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  8. Fix pep8

    @EmmaRenauld
    EmmaRenauld committed Feb 1, 2024
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Commits on Feb 14, 2024

  1. Manage wildcards like real wildcards

    @EmmaRenauld
    EmmaRenauld committed Feb 14, 2024
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  2. Fix possible nested lists

    @EmmaRenauld
    EmmaRenauld committed Feb 14, 2024
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Commits on Feb 27, 2024

  1. Compute connectivity from labels: save rejected streamlines

    @EmmaRenauld
    EmmaRenauld committed Feb 27, 2024
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  2. Create hdf5: add connectivity labels volume

    @EmmaRenauld
    EmmaRenauld committed Feb 27, 2024
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  3. Add connectivity labels volume in SFTData

    @EmmaRenauld
    EmmaRenauld committed Feb 27, 2024
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  4. Fix unncessarty call of iterator

    @EmmaRenauld
    EmmaRenauld committed Feb 27, 2024
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  5. Fix l2t propagation during validation for many subjs

    @EmmaRenauld
    EmmaRenauld committed Feb 27, 2024
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Commits on Feb 28, 2024

  1. Fix return of labels.

    @EmmaRenauld
    EmmaRenauld committed Feb 28, 2024
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  2. Change logging level in compute connectivity

    @EmmaRenauld
    EmmaRenauld committed Feb 28, 2024
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  3. Fix a few lines too long

    @EmmaRenauld
    EmmaRenauld committed Feb 28, 2024
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  4. More line too longs. Fix tqdm appearance

    @EmmaRenauld
    EmmaRenauld committed Feb 28, 2024
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Commits on Feb 29, 2024

  1. Update scilpy script

    @EmmaRenauld
    EmmaRenauld committed Feb 29, 2024
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  2. Remove new logging from scilpy. Warning max for root logger

    @EmmaRenauld
    EmmaRenauld committed Feb 29, 2024
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  3. Fix sampler: batch size must be int

    @EmmaRenauld
    EmmaRenauld committed Feb 29, 2024
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Commits on Mar 1, 2024

  1. Fix -v usage from scilpy update

    @EmmaRenauld
    EmmaRenauld committed Mar 1, 2024
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