Merge pull request #8 from ppoulin91/patch-1

Fix --output_dir used only for Compute_Kernel
scilus · Aug 9, 2021 · ef2bcfc · ef2bcfc
2 parents 789be4c + 2f76895
commit ef2bcfc
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -22,4 +22,8 @@ params {
     b_thr=40
 }
 
+if(params.output_dir) {
+    process.publishDir = {"$params.output_dir/$sid/$task.process"}
+}
+
 singularity.autoMounts=true