[ENH] Add mrds scripts part 1 #877
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Scilpy test suite | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| MPLBACKEND: agg | |
| OPENBLAS_NUM_THREADS: 1 | |
| jobs: | |
| test: | |
| runs-on: scilus-runners | |
| if: github.repository == 'scilus/scilpy' | |
| steps: | |
| - name: Checkout repository at merge | |
| uses: actions/checkout@v4 | |
| - name: Fetch python version from repository | |
| id: python-selector | |
| run: echo "python-version=$(head -1 .python-version)" >> $GITHUB_OUTPUT | |
| - name: Set up Python for Scilpy | |
| uses: actions/setup-python@v5.0.0 | |
| with: | |
| python-version: ${{ steps.python-selector.outputs.python-version }} | |
| cache: 'pip' | |
| - name: Install non-python dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y \ | |
| build-essential \ | |
| curl \ | |
| git \ | |
| libblas-dev \ | |
| liblapack-dev \ | |
| libfreetype6-dev | |
| - name: Install Scilpy | |
| run: | | |
| export SETUPTOOLS_USE_DISTUTILS=stdlib | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install --upgrade "setuptools<71.0.0" | |
| python -m pip install -e . | |
| - name: Run tests | |
| run: | | |
| export C_INCLUDE_PATH=$pythonLocation/include/python${{ steps.python-selector.outputs.python-version }}:$C_INCLUDE_PATH | |
| pytest --cov-report term-missing:skip-covered | |
| - name: Save test results and coverage | |
| uses: actions/upload-artifact@v4 | |
| id: test-coverage-results | |
| with: | |
| name: test-coverage-${{ github.run_id }} | |
| retention-days: 1 | |
| include-hidden-files: true | |
| path: | | |
| .coverage | |
| .test_reports/ | |
| coverage: | |
| runs-on: scilus-runners | |
| if: github.repository == 'scilus/scilpy' | |
| needs: test | |
| steps: | |
| - name: Checkout repository at merge | |
| uses: actions/checkout@v4 | |
| - name: Set up Python for codecov upload | |
| uses: actions/setup-python@v5.0.0 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' | |
| - name: Install pycoverage | |
| run: pip install coverage | |
| - name: Download test results and coverage | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-coverage-${{ github.run_id }} | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| flags: unittests | |
| name: scilpy-unittests-${{ github.run_id }}-${{ github.run_attempt }} | |
| verbose: true | |
| fail_ci_if_error: true | |
| plugin: pycoverage | |