Skip to content

Commit

Permalink
Update fibertube_tracking.rst
Browse files Browse the repository at this point in the history
  • Loading branch information
VincentBeaud authored Nov 11, 2024
1 parent 9cc2e90 commit 25113c9
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions docs/source/documentation/fibertube_tracking.rst
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ Fibertube Tracking:
grid of fODFs or peaks. It directly tracks and reconstructs
fibertubes, i.e. streamlines that have an associated diameter.

.. image:: https://github.com/user-attachments/assets/2e4253b3-05ca-4881-8482-3a96db0a76c9
.. image:: https://github.com/user-attachments/assets/0286ec53-5bca-4133-93dd-22f360dfcb45
:alt: Fibertube visualized in 3D

Methodology
Expand Down Expand Up @@ -256,7 +256,7 @@ segment of another fibertube.
NC: "No Connection": A streamline that has not ended in the first or final
segment of any fibertube.

.. image:: https://github.com/user-attachments/assets/4871cb09-313e-499a-b56d-a668bdb631db
.. image:: https://github.com/user-attachments/assets/bc61ce87-6581-4714-83d2-9602380f2697
:alt: Visual representation of VC, IC, and NC

Res_VC: "Resolution-wise Valid Connection": A streamline that passes
Expand All @@ -271,7 +271,7 @@ Res_NC: "Resolution-wise No Connection": A streamlines that does not pass
closer than [blur_radius] away from the first or last segment of any
fibertube.

.. image:: https://github.com/user-attachments/assets/c480f5e6-14f8-456a-b8e8-77569661c452
.. image:: https://github.com/user-attachments/assets/d8c1a376-e2b9-454c-9234-5a124bde3c02
:alt: Visual representation of Res_VC, Res_IC, and Res_NC

The "absolute error" of a coordinate is the distance in mm between that
Expand All @@ -283,7 +283,7 @@ Here is a visual representation of streamlines (Green) tracked along a fibertube
(Only the centerline is shown in blue) with their coordinate absolute error (Red).


.. image:: https://github.com/user-attachments/assets/73235244-0bf1-4506-9e4e-0b94d4bf993f
.. image:: https://github.com/user-attachments/assets/62324b66-f66b-43ae-a772-086560ef713a
:alt: Visualization of the coordinate absolute error

Computed metrics:
Expand Down

0 comments on commit 25113c9

Please sign in to comment.