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Update fibertube_tracking.rst
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VincentBeaud authored Nov 6, 2024
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Expand Up @@ -62,14 +62,14 @@ Preparing the data

To obtain the data required for this demo, activate your scilpy virtual
environment, navigate to the scilpy repository on your computer and enter
the command: `pytest -v`. This will pull all the files required for testing
the command: ``pytest -v``. This will pull all the files required for testing
and then begin the test sequence. As soon as the tests start, you can abort
the process and navigate to any location outside of the scilpy repository that
you see fit for this demo.

Then, execute the following command:
`cp ~/.scilpy/others/fibercup_bundles.trk ./centerlines.trk` to bring the data
to your current location and rename it to `centerlines.trk`.
``cp ~/.scilpy/others/fibercup_bundles.trk ./centerlines.trk`` to bring the data
to your current location and rename it to ``centerlines.trk``.


.. image:: https://github.com/user-attachments/assets/3be43cc9-60ec-4e97-95ef-a436c32bba83
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