Merge pull request #18 from selfdecode/feat/life-brain

feat: Life&Brain
selfdecode · Sep 25, 2023 · b92a481 · b92a481
2 parents d312ad6 + a9dd7c8
commit b92a481
Showing 1 changed file with 10 additions and 1 deletion.
diff --git a/src/snps/io/reader.py b/src/snps/io/reader.py
@@ -1046,7 +1046,16 @@ def parser():
                     "Chr": NORMALIZED_DTYPES["chrom"],
                 },
             )
-
+            if df.shape[1] == 1:
+                # Life&Brain uses "," as sep
+                df = pd.read_csv(
+                    io.StringIO(data),
+                    engine="c",
+                    dtype={
+                        "Position": NORMALIZED_DTYPES["pos"],
+                        "Chr": NORMALIZED_DTYPES["chrom"],
+                    },
+                )
             # reserve columns we want out
             assert "rsid" not in df.columns
             assert "chrom" not in df.columns