MRG: refactor the internal Rust API to support container-level functionality #1206
ctbAnnotations
1 error and 7 warnings
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tests_on_linux
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
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tests_on_linux
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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tests_on_linux
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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tests_on_linux
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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tests_on_linux
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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tests_on_linux
error libmamba Error when extracting package: Could not stat info/recipe/parent/tests/howdy-dso.c
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tests_on_linux
Found incorrect download: libgomp. Aborting
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tests_on_linux
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/home/runner/miniconda3/lib/python3.12/site-packages/conda/exception_handler.py", line 18, in __call__
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 960, in exception_converter
raise e
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 953, in exception_converter
exit_code = _wrapped_main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 899, in _wrapped_main
result = do_call(parsed_args, p)
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 768, in do_call
exit_code = create(args, parser)
^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 603, in create
return install(args, parser, "create")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 559, in install
transaction.fetch_extract_packages()
RuntimeError: Found incorrect download: libgomp. Aborting
`$ /home/runner/miniconda3/condabin/mamba create --name sourmash_dev python=3.12`
environment variables:
CIO_TEST=<not set>
CONDA=/home/runner/miniconda3
CONDA_ROOT=/home/runner/miniconda3
CURL_CA_BUNDLE=<not set>
DEPLOYMENT_BASEPATH=/opt/runner
GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json
GITHUB_PATH=/home/runner/work/_temp/_runner_file_commands/add_path_832db8c5-b9ec-
46d8-8c24-17a8ade25892
LD_PRELOAD=<not set>
PATH=/home/runner/miniconda3/condabin:/snap/bin:/home/runner/.local/bin:/op
t/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendo
r/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin
:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/ga
mes:/snap/bin
REQUESTS_CA_BUNDLE=<not set>
SELENIUM_JAR_PATH=/usr/share/java/selenium-server.jar
SSL_CERT_FILE=<not set>
SWIFT_PATH=/usr/share/swift/usr/bin
active environment : None
user config file : /home/runner/.condarc
populated config files : /home/runner/miniconda3/.condarc
/home/runner/.condarc
conda version : 24.11.2
conda-build version : not installed
python version : 3.12.8.final.0
solver : libmamba (default)
virtual packages : __archspec=1=zen2
__conda=24.11.2=0
__glibc=2.39=0
__linux=6.8.0=0
__unix=0=0
base environment : /home/runner/miniconda3 (writable)
conda av data dir : /home/runner/miniconda3/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /home/runner/conda_pkgs_dir
envs directories : /home/runner/miniconda3/envs
/home/runner/.conda/envs
platform : linux-64
user-age
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