Bugfix Release v0.2.2

Fix small typo in sourpurge pipeline step which had indent/space problem.

AAFTF release v0.2.1

Small update to v0.2.0 to update README and test_pipeline.sh to reflect new syntax. Also bump release to get Zenodo in sync.

AAFTF release v0.2.0

This release reworks the workdir concept, requires specification of file prefix, and switches to BBTools bbduk for trimming and filtering instead for performance and accuracy improvements.

New command 'pipeline' will generate commands of all steps at once to support pipelining.

This version has been stably run on several hundred fungal genomes in testing and production. Some memory usage tweaking has to be made (see --mem for assembly and filter steps) depending on depth of coverage and genome size.

Initial release archive

Make a release for initial sharing