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Update 04_mysterySampleID.md
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rrbrown98 committed Sep 11, 2023
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Expand Up @@ -34,8 +34,8 @@ cat $me/data/samples/sampleX.fastq | awk '(NR%4==2){print length($0)}' | sort |
less sampleX_readlength.hist.txt
```


## Using Nanostat

We used FastQC earlier to get some qc metrics, but we're now working with long read data, and thus we'll only use NanoStat for metrics.
```
NanoStat --fastq $me/data/samples/sampleX.fastq -n sampleX_nanostat.summary
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