Export full path to LINC and VLBI folders

tikk3r · Oct 16, 2023 · 26946c2 · 26946c2
1 parent 61baff7
commit 26946c2
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/runners/run_lofar-vlbi-delay-calibration.sh b/runners/run_lofar-vlbi-delay-calibration.sh
@@ -113,8 +113,8 @@ export LOGSDIR=$WORKDIR/logs_VLBI_CWL
 ## The trailing slash is important here.
 export TMPDIR=$WORKDIR/tmpdir_VLBI_CWL/
 
-export LINC_DATA_ROOT
-export VLBI_DATA_ROOT
+export LINC_DATA_ROOT=$(readlink -f $LINC_DATA_ROOT)
+export VLBI_DATA_ROOT=$(readlink -f $VLBI_DATA_ROOT)
 git clone https://github.com/jurjen93/lofar_helpers.git $LOFAR_HELPERS_ROOT
 git clone https://github.com/rvweeren/lofar_facet_selfcal.git $FACETSELFCAL_ROOT
 sed -i '7704d' $FACETSELFCAL_ROOT/facetselfcal.py

diff --git a/runners/run_lofar-vlbi-split-directions.sh b/runners/run_lofar-vlbi-split-directions.sh
@@ -151,8 +151,8 @@ elif [ -d $VLBI_DATA_ROOT ] && [ -d $VLBI_DATA_ROOT/steps ]; then
     echo $VLBI_DATA_ROOT exists and seems to contain VLBI-cwl. Continueing...
 fi
 
-export LINC_DATA_ROOT
-export VLBI_DATA_ROOT
+export LINC_DATA_ROOT=$(readlink -f $LINC_DATA_ROOT)
+export VLBI_DATA_ROOT=$(readlink -f $VLBI_DATA_ROOT)
 
 # Obtain LINC commit used
 cd $LINC_DATA_ROOT