Automatically bind data and run directories

tikk3r · Mar 11, 2024 · a09ca60 · a09ca60
1 parent bde82f1
commit a09ca60
Show file tree

Hide file tree

Showing 4 changed files with 16 additions and 0 deletions.
diff --git a/runners/run_LINC_calibrator_HBA.sh b/runners/run_LINC_calibrator_HBA.sh
@@ -59,6 +59,10 @@ else
 fi
 export RUNDIR
 
+# Automatically bind the data and runtime directories.
+APPTAINER_BINDPATH=$RUNDIR:$DATADIR:$APPTAINER_BINDPATH
+export APPTAINER_BINDPATH
+
 ## WORKDIR is where all the other directories will be stored.
 export WORKDIR=$(mktemp -d -p "$RUNDIR")
 echo "Working directory is $WORKDIR"

diff --git a/runners/run_LINC_target_HBA.sh b/runners/run_LINC_target_HBA.sh
@@ -69,6 +69,10 @@ else
 fi
 export RUNDIR
 
+# Automatically bind the data and runtime directories.
+APPTAINER_BINDPATH=$RUNDIR:$DATADIR:$APPTAINER_BINDPATH
+export APPTAINER_BINDPATH
+
 ## WORKDIR is where all the other directories will be stored.
 export WORKDIR=$(mktemp -d -p "$RUNDIR")
 echo "Working directory is $WORKDIR"

diff --git a/runners/run_lofar-vlbi-delay-calibration.sh b/runners/run_lofar-vlbi-delay-calibration.sh
@@ -72,6 +72,10 @@ else
 fi
 export RUNDIR
 
+# Automatically bind the data and runtime directories.
+APPTAINER_BINDPATH=$RUNDIR:$DATADIR:$APPTAINER_BINDPATH
+export APPTAINER_BINDPATH
+
 # Warn on low disk space (< 25 TB).
 reqSpace=15000000000000
 reqSpaceHum=$(echo "scale=1;$reqSpace/1000000000000" | bc -l)T

diff --git a/runners/run_lofar-vlbi-split-directions.sh b/runners/run_lofar-vlbi-split-directions.sh
@@ -81,6 +81,10 @@ else
 fi
 export RUNDIR
 
+# Automatically bind the data and runtime directories.
+APPTAINER_BINDPATH=$RUNDIR:$DATADIR:$APPTAINER_BINDPATH
+export APPTAINER_BINDPATH
+
 ## WORKDIR is where all the other directories will be stored.
 export WORKDIR=$(mktemp -d -p "$RUNDIR")
 ## Location of LINC. This must be a user-writable location for this wrapper script.