An open-source platform for developing protein models beyond AlphaFold.
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Jun 26, 2024 - Python
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alphafold-multimer
Here are 17 public repositories matching this topic...
Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
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Aug 29, 2024 - Jupyter Notebook
Run AlphaFold2 (and multimer) step by step
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Apr 23, 2022 - Python
RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
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Aug 15, 2024
This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
bioinformatics protein-structure structure protein disordered-proteins alphafold alphafold2 alphafold-multimer alphafold3
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Jul 25, 2023 - Python
A curated list of awesome protein design research, software and resources.
bioinformatics structural-biology protein-structure molecular-biology protein-design protein-protein-interaction protein-sequence structural-bioinformatics protein-engineering protein-folding protein-structure-prediction bioinformatics-tool protein-function alphafold alphafold2 alphafold-multimer
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May 10, 2022
Screen interactions with AlphaFold Multimer
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Nov 11, 2024 - Python
GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.
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Aug 7, 2024 - Python
A Tufts Research Technology Workshop detailing how to use AlphaFold 2 on the Tufts HPC cluster
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May 13, 2022 - HTML
Map AlphaFold PAE values on a model
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Oct 19, 2024 - Python
Repo to build AF models of endogeneous ligands
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Mar 29, 2023 - Shell
This is a collection of script for analysing Alphafold multimer results during highthroughput screening using Colabfold or similar packages.
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Sep 18, 2024 - Python
AlphaFold pulldown implementation adapted from https://github.com/KosinskiLab/AlphaPulldown
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Jan 4, 2025 - Jupyter Notebook
RAPSAP is a comprehensive archive of protein structures that pertain specifically to autophagy, aimed at improving structural understanding of the biological process
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May 3, 2023
AI based protein modeling and design
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Nov 13, 2024 - Python
Code repository for the SPOC tool for scoring binary AF-M predicitons.
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Jan 20, 2025 - Perl
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