A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.

E2EDNA with OpenMM implementation = OpenDNA

Implementation of SMART APtamer in Python

Multiple Objective Optimization work for optimizing aptamer binding to new targets done in collaboration with Chris Knight and Josh Knowles

BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

Implementation of K-means that categorizes sequences into groups based on similarity score derived from Smith-Waterman algorithm.

A simple .exe GUI tool to create random Aptamer DNA sequences of specified length and GC content (Windows executable available)