A versatile sequenced read processor for nanopore direct RNA sequencing
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May 24, 2020 - Python
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barcoding
Here are 11 public repositories matching this topic...
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
nextflow
bioinformatics-pipeline
sequence-alignments
singularity-container
sequence-alignment
barcoding
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Aug 25, 2023 - Shell
Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787
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May 10, 2021 - HTML
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
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Feb 9, 2021 - Perl
Wrapper for BOLD API (+ barcode auditing)A molecular identification toolkit for rattan palms using genome skimming and target capture data.
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Oct 2, 2024 - Shell
Web-app to explore Mycobacterium tuberculosis complex
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Jun 6, 2024 - Python
A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file
python
command-line
mycobacterium-tuberculosis-complex
genotyping
barcoding
mycobacterium-tuberculosis
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Apr 6, 2023 - Python
Variant detection and lineage barcoding of Mycobacterium tuberculosis
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Mar 7, 2023 - Python
Variability measures of DNA barcodes sequences (i.e. Intraspecific and Interespecific)
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Sep 17, 2018 - R
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