Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
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Dec 2, 2024 - Python
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tuberculosis
Here are 111 public repositories matching this topic...
AiAi.care project is teaching computers to "see" chest X-rays and interpret them how a human Radiologist would. We are using 700,000 Chest X-Rays + Deep Learning to build an FDA 💊 approved, open-source screening tool for Tuberculosis and Lung Cancer. After an MRMC clinical trial, AiAi CAD will be distributed for free to emerging nations, charita…
deep-learning tensorflow fda keras scikit-image dicom pytorch lung-cancer lung-cancer-detection charity convolutional-neural-networks radiology tuberculosis x-ray cxr-lungs ct-scans postero-anterior teleradiology radiologist
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Sep 20, 2020 - Dockerfile
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
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Aug 9, 2024 - Perl
A multivariate multi-step LSTM forecasting model for tuberculosis incidence with model explanation
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May 24, 2022 - Python
vSNP -- validate SNPs
bam-files snps pipeline genomics vcf phylogenetics snp wgs high-throughput-sequencing high tuberculosis whole-genome-sequencing analysis-pipeline mycobacterium-tuberculosis-complex brucella freebayes
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Sep 19, 2024 - Python
An R package for accessing and summarising the World Health Organisation Tuberculosis data.
package data r shiny eda rstats who tuberculosis world-health-organization binder-ready tb-incidence-rates tb-data
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Jun 11, 2020 - HTML
Detecting tuberculosis from X-ray scan using pytorch
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Jan 23, 2019 - Jupyter Notebook
A snakemake workflow for WGS-based tuberculosis transmission analysis
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Dec 3, 2024 - HTML
A pipeline for Bacterial Whole genome sequence data analysis
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Jul 24, 2022 - Python
A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research
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Dec 24, 2024 - Nextflow
Profile RNA-seq data using published TB gene signatures
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Dec 8, 2024 - R
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
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Apr 8, 2024 - Python
PhD thesis submitted to the University of Bristol. Title: Modelling BCG vaccination in the UK: What is the impact of changing policy?
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Jan 7, 2020 - C++
Mycobacterial pipeline
bioinformatics genomics nextflow pathogen sequencing next-generation-sequencing bioinformatics-pipeline global-health tuberculosis infectious-diseases
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Dec 20, 2024 - Python
AiAi code-charity project for Cancer and Tuberculosis screening in Radiology Chest X-Rays (PA - CXR) using Deep Learning powered CAD algorithms. Come join our all-volunteer team to improve the healthcare in emerging nations!
deep-learning cancer fda dicom cad artificial-intelligence fhir hl7 pacs hipaa radiology ris tuberculosis computer-aided-detection teleradiology radiologist chest-xray aiai
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Jul 15, 2021 - JavaScript
Training AdaBoost Classifier of 500 estimators to classify HOG&LBP features of TB &NTB (Tuberculosis) chest X-ray images
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May 1, 2017 - Jupyter Notebook
Clinical Trial Risk Tool for analysing clinical trial protocols using natural language processing and assessing the risk of ending uninformatively, developed by Fast Data Science
nlp machine-learning natural-language-processing natural-language clinical-trials hiv nlp-machine-learning pharma tuberculosis natural-language-understanding tb pharmaceuticals
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Sep 25, 2024 - Jupyter Notebook
A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe
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Jul 20, 2022 - Python
vSNP -- validate SNPs
bam-files snps pipeline genomics phylogenetics influenza wgs high-throughput-sequencing bwa-mem tuberculosis whole-genome-sequencing analysis-pipeline vcf-files mycobacterium-bovis mycobacterium-tuberculosis-complex mycobacterium-bovis-af2122 brucella freebayes sars-cov-2
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Oct 1, 2024 - Python
MEDINFORM - AI Powered Multipurpose Web platform for Medical Image Analysis
redux javascript machine-learning deep-learning reactjs docker-image python3 transfer-learning vgg16 inceptionv3 tuberculosis diabetic-retinopathy-detection resnet-50 gcp-cloud-functions skin-cancer pneumonia-detection gcp-cloud-build malaria-detection gcp-cloud-run covid-19
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Jun 19, 2020 - CSS
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