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9 public repositories
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Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments
CpG island prediction with Hidden Markov Models, Viterbi and Baum-Welch algorithm
Updated
Sep 4, 2023
Jupyter Notebook
CytoMeth tool compiles a set of open source software named in the Roche pipeline guidelines to perform SeqCap Epi data analysis.
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
Updated
Apr 9, 2021
Python
A portfolio of the work done during COMP 260 during S17 at Wesleyan University
Updated
May 16, 2017
Python
Updated
Apr 9, 2024
Python
decoding, evaluating and learning HMMs from a bioinformatics perspective
Updated
Jan 1, 2021
Jupyter Notebook
Python ohjelmointia biotieteilijöille
Updated
Oct 16, 2017
Python
A project in Bioinformatics 2: detecting CpG islands using Hidden Markov Model.
Updated
Jan 15, 2023
Jupyter Notebook
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