Signal-level algorithms for MinION data

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

R package for DNA methylation analysis

A (mostly) universal methylation extractor for BS-seq experiments.

Methylation/modified base calling separated from basecalling.

Deep neural networks for predicting CpG methylation

A bioinformatics tool for working with modified bases

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

Detecting methylation using signal-level features from Nanopore sequencing reads

Arioc: GPU-accelerated DNA short-read alignment

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

MethPhaser: methylation-based haplotype phasing of human genomes

Python package to analyze DNA methylation data

DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

Python-based preprocessing software for Illumina methylation arrays

A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.

Bioinformatics library in Kotlin

ENCODE whole-genome bisulfite sequencing (WGBS) pipeline