🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
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Updated
Nov 1, 2024 - Python
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crispr-target
Here are 18 public repositories matching this topic...
Pre-trained models for the crisprScore package
bioconductor
crispr-analysis
crispr
crispr-target
scoring-models
crispr-cas9
grna
grna-sequence
bioconductor-package
sgrna
crispr-design
sgrna-design
grna-sequences
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Updated
Oct 23, 2024 - R
Bowtie-based alignment of CRISPR gRNA spacer sequences
bioconductor
crispr-analysis
crispr
crispr-target
bowtie
aligner
crispr-cas9
grna
grna-sequence
bioconductor-package
sgrna
crispr-design
sgrna-design
grna-sequences
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Updated
Oct 23, 2024 - R
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
genomics
bioconductor
crispr
crispr-target
crispr-cas9
grna
grna-sequence
bioconductor-package
scoring-algorithm
sgrna
crispr-design
sgrna-design
grna-sequences
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Updated
Oct 4, 2024 - Python
Explore the cancer relevance of your gene list
cancer
proteins
disease-gene-association
tcga-data
crispr-target
protein-protein-interaction
co-expression
report-generator
prioritization
genesets
high-throughput-screening
cancer-survival
functional-enrichment-analysis
pathway-enrichment-analysis
protein-complexes
tissue-enrichment-analysis
cancer-hallmark-evidence
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Updated
Sep 9, 2024 - R
Tutorials for the crisprVerse
crispr-analysis
crispr
genome-analysis
crispr-target
bowtie
grna
grna-sequence
cas12a
crispr-design
crispr-cas
grna-sequences
cas13
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Updated
Jul 25, 2024 - TeX
Base functions and classes for CRISPR gRNA design
bioconductor
crispr
crispr-target
crispr-cas9
grna
rpackage
grna-sequence
bioconductor-package
crispr-design
grna-sequences
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Updated
Jul 23, 2024 - R
Useful human and mouse data for the crisprVerse ecosystem
bioconductor
crispr-analysis
crispr
crispr-target
crispr-cas9
grna
grna-sequence
bioconductor-package
sgrna
crispr-design
sgrna-design
grna-sequences
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Updated
Oct 23, 2024 - R
Comprehensive design of CRISPR gRNAs for nucleases and base editors
bioconductor
crispr
crispr-target
crispr-cas9
grna
grna-sequence
bioconductor-package
sgrna
crispr-design
sgrna-design
grna-sequences
genomics-analysis
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Updated
Jul 18, 2024 - R
Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+
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Updated
Nov 25, 2023 - Python
Collection of R packages that work in harmony for CRISPR gRNA design
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Updated
Feb 28, 2023 - R
BWA-based alignment of CRISPR gRNA spacer sequences
bioconductor
crispr-analysis
crispr
bwa
crispr-target
aligner
crispr-cas9
grna
grna-sequence
bioconductor-package
sgrna
crispr-design
sgrna-design
grna-sequences
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Updated
Oct 23, 2024 - R
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
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Updated
Oct 18, 2021 - Python
Research associated to CRISPR-Cas. Completed under Dr. Manuel Lladser at CU boulder
python
bioinformatics
matlab
markov-chain
sequencing
crispr-analysis
numerical-integration
crispr-target
crispr-cas9
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Updated
Dec 2, 2018 - MATLAB
CRISPR-Cas9 Excision Therapy Suitability
bioinformatics
python3
microarray
crispr-analysis
crispr
crispr-target
crispr-cas9
microarray-design
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Updated
Jun 29, 2018 - Python
Search guide-RNA sequences given a genome or gene sequence
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Updated
May 5, 2017 - Perl
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Apr 28, 2017 - R
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