Automatically link across pages in MkDocs.
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Aug 26, 2025 - Python
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cross-linking
Here are 33 public repositories matching this topic...
A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly
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Oct 15, 2025 - Rust
A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.
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Oct 15, 2025 - Rust
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
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Jan 11, 2025 - C++
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Oct 3, 2023 - Python
MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of cleavable and non-cleavable crosslinkers from MS2 and MS3 spectra.
search-engine proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 crosslinking xlms crosslinker tandem-ms non-cleavable cleavable
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Sep 3, 2025
Export MS Annika crosslink results to different formats.
visualization python proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 crosslinking xlms crosslinker tandem-ms
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Jun 25, 2025 - Python
A fast and exhaustive cross-linked peptides identification tool.
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Dec 9, 2023 - Java
Modeling of the SEA complex
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Jan 14, 2021 - HTML
Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.
python annotation proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 fragment-ions crosslinking xlms crosslinker tandem-ms doublet-ions
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Dec 19, 2024 - Python
Extensions for better usability of the cross-linking tool MaXLinker.
python proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 crosslinking xlms crosslinker tandem-ms
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Sep 4, 2023 - Python
Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
electron-microscopy small-angle-xray-scattering x-ray-crystallography integrative-modeling cross-linking comparative-models
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Jan 21, 2025 - Python
A python package to process protein cross-linking data.
python package gui protein webapp proteomics mass-spectrometry interaction spectrometry ppi mass cross-linking interactomics crosslinking xlms crosslinker pyxlms
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Oct 15, 2025 - Python
Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"
lammps cross-linking metastability condensates langevin-dynamics polymer-physics llps phase-separation
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Jan 30, 2025 - Jupyter Notebook
Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1
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Jan 21, 2025 - Python
Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps
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Dec 17, 2023 - Python
My Z80 Tools - Credits to Piergiorgio Betti - https://www.z80cpu.eu/projects/78-data-articles/projects/76-mdz80
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Jul 24, 2020 - C
Short talk presentation, poster and abstract for APMRS-CEEPC 2024
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Sep 20, 2024
MS Annika webpage built with nextra.
search-engine proteomics mass-spectrometry spectrometry mass cross-linking ms2 ms3 crosslinking xlms crosslinker tandem-ms non-cleavable cleavable
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Sep 3, 2025 - MDX
Link to the web application for pyXLMS.
python package gui protein webapp proteomics mass-spectrometry interaction spectrometry ppi mass cross-linking interactomics crosslinking xlms crosslinker pyxlms
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Aug 15, 2025
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