Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides

MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.

Export MS Annika crosslink results to different formats.

Extensions for better usability of the cross-linking tool MaXLinker.

Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.

Generate a spectral library for Spectronaut from MS Annika results.

List of all available extensions for our cross-linking search engine MS Annika.

A script to merge and optionally validate several MS Annika search results.

Short talk presentation, poster and abstract for APMRS-CEEPC 2024

Extensions to use the cross-linking tool Scout with other software.

Results and Evaluation of the MS3 Search Algorithm of MS Annika.

Helper scripts for crosslink analysis.

A script and functions to group and validate MS Annika results.

Repository containing scripts used for the analysis and visualization of the results of the MS Annika 3.0 non-cleavable crosslink search.

Short Talk Presentation for APMRS 2022