Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.

A python framework for microbial natural products data mining by integrating genomics and metabolomics data

Python implementation of Combat for data harmonisation, allowing also to remove unwanted effects

This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates

A Python toolkit for biomedical data integration

Self-hostable, open-source engine for reproducible data harmonization, dataset building & exploration

Code and sample data for McGregor et al., 2024

Python library for intelligent data stewardship using Large Language Model (LLM) embeddings

AD & PD cohort variable distributions

Intelligent data steward toolbox using Large Language Model embeddings for automated Data-Harmonization

International Physical Activity Questionnaire (IPAQ) variables

Example Jupyter notebook and R scripts using Harmony in real research problems

Visualizing demographic evolution using geographically inconsistent census data

This is the source code for the Harmony project REST API

A lightweight R script for text mining and harmonizing medical phenotype data. Cleans, standardizes, and maps diagnoses to ICD-10 codes, with clinical annotations for enhanced data usability.

Miscellaneous codes for spatial mapping and raster data manipulation