Official AFNI source and documentation
Small Animal Magnetic Resonance Imaging via Python.
Tools for creating full TVB models from individual anatomical scans
Introduction to dMRI
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
Gray-matter Based Spatial Statistics
This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients
MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness
Scripts for MRI preprocessing
Software that functionally segments white matter connections to generate task-specific subcomponents of fiber bundles.
Reconstruction of preprocessed q-space images (dMRI)
Pipeline to process anatomical data, including microstructure metrics from DWI and MT data
Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"
Pyneapple is an advanced tool for analysing multi-exponential signal data in MR DWI images.
Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backbone.
Along Tract Analysis of Diffusion Weighted Images
Fitting of three diffusion models to data acquired using combined T2-DWI.
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