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DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
A MATLAB/C++ implementation of solid texture synthesis algorithms for constructing statistically representative 3D microstructure datasets from only 2D data.
MicroSim is a project under the National Supercomputing Mission, Govt of India. The project offers a set of codes that can use high performance computing to simulate microstructure evolution using the Phase Field technique. Follow us on LinkedIn: https://www.linkedin.com/company/microstructure-simulator/
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