Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
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Jul 19, 2024 - C++
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epitranscriptomics
Here are 18 public repositories matching this topic...
Analyse RNA feature distributions.
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Dec 16, 2024 - Jupyter Notebook
🧪 Pipeline for detecting pseudouridine modification (BID-seq)
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May 8, 2024 - Python
🧪 Optimized protocol for m6A-SAC-seq
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Oct 6, 2024 - Python
Base-conversion Sequencing Aligner
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Dec 11, 2024 - C
Magnipore: Differential single nucleotide changes of ONT signals
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Mar 4, 2024 - Red
Online version of tool is live
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Jun 3, 2021 - R
Ultrafast bisulfite
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Apr 23, 2024 - Python
CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.
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May 23, 2022 - Python
High-throughput pipeline for modified mRNA annotation and long non-coding RNA annotation
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Nov 17, 2024 - Shell
High-throughput Workflow for Processing and Analyzing RNA-Seq Data
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Aug 21, 2023 - Shell
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
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Dec 16, 2023 - Python
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
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Nov 13, 2022
handful of tools that might be needed before or after HAMR
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Aug 3, 2023 - R
A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
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May 5, 2024 - R
Guide for the Baccarelli Lab GitHub
snps toxicology health methylation epigenetics data-analysis dna-methylation publichealth r-programming kernel-regression snp-genotyping epigenomics machinelearning-r epitranscriptomics environmental-exposures columbia-university illumina-data epidemiology-analysis
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Jan 11, 2019
Database of pairwise consensuses for miR-mRNA target interactions
systems-biology computational-biology miranda transcriptomics mirna target-prediction mirna-mrna-interaction mirna-targets mirna-database epitranscriptomics post-transcriptional-regulation target-scan mirdb mirtarbase mirmap
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Nov 3, 2017 - R
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