MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
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Jul 12, 2024 - C
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eukaryotes
Here are 23 public repositories matching this topic...
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
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Apr 19, 2023 - R
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
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Sep 30, 2020 - Python
tiara – a tool for DNA sequence classification
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Mar 2, 2024 - Python
Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
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Dec 20, 2024 - Nextflow
Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
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Dec 18, 2024 - Python
Pipeline for eukaryotic genome annotation based on external evidences
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Feb 23, 2023 - R
A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
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Dec 12, 2024 - Nextflow
Scripts for paper Vaulot et al. 2022
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Dec 13, 2021 - R
examination of genome size across all kingdoms
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Sep 4, 2023 - R
Simulation of the motion of the eukariotic cell Chlamydomonas Reinhardtii
simulation sdl physics physics-simulation sde stochastic-differential-equations eukaryotes microswimmer
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Mar 12, 2021 - C++
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
bioinformatics python3 bioinformatics-pipeline fungi genome-assembly-evaluation bioinformatics-algorithms single-cell-genomics eukaryotes bioinformatics-tool
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May 9, 2024 - Python
The Tree of Sex Ontology (TOSO) covers any trait related to reproduction included in the Tree of Sex database
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Jul 8, 2024 - Makefile
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.
ecosystem statistics taxonomy microbiology sequence bacteria coastal anova amplicon permanova eukaryotes archaea
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Jul 20, 2019
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
bioinformatics phylogenetics microbiology bacteria eukaryotes archaea taxonomic-identifiers taxonomic-lineages
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Jun 11, 2024 - Python
MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.
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Dec 11, 2023 - R
V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.
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Jul 25, 2023 - Python
EuCAP, a Eukaryotic Community Annotation Package (adapted from the implementation developed for the Rice Genome Annotation Project)
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Jan 19, 2018 - Perl
A program that uses the Synteny Index algorithm to compare between Eukaryotes.
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Jan 3, 2023 - Perl
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