GCclassifier: An R package for the prediction of molecular subtypes of gastric cancer
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Jan 22, 2024 - R
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gastric-cancer
Here are 7 public repositories matching this topic...
A classifier for tumor microenvironment subtype based on ensemble machine learning models
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Sep 7, 2024 - R
This repository contains all codes used in the "The Gastric Microbiome and Gastric Carcinogenesis: Bacterial Diversity, Co-occurrence Patterns and Predictive Models" projects
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Jul 29, 2022 - R
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Nov 17, 2023 - R
voronoi-diagram biomarker-discovery breast-cancer prostate-cancer sobel-filter drug-response-prediction circulating-tumor-cells circular-hough-transform difference-of-gaussian gastric-cancer tubulin-inhibitors intensity-histogram-thresholding tubulin-bundling tubulin-tyrosination transcription-factor-localization stationary-wavelet-transform feature-eccentricity microfluidics-chip-enrichment brca1-drug-resistance paclitaxel-therapy
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Nov 26, 2023 - MATLAB
deep-learning lung-cancer ovarian-cancer whole-genome-sequencing breast-cancer colon-cancer pancreatic-cancer early-detection fragmentomics fragmentation-patterns rectal-cancer gastric-cancer colon-adenoma rectal-adenoma bile-duct-cancer duodenal-cancer sub-clinical-disease dna-fragment-length identify-disease-stage early-detection-of-disease
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Nov 26, 2023 - R
Recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.
python machine-learning bioinformatics clustering pca tsne umap spectral-clustering single-cell-rna-seq louvain-algorithm ward-linkage sc-rna-seq go-annotation scanpy gmm-clustering sc-rna-seq-analysis average-linkage leiden-algorithm gastric-cancer marker-gene-identification
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Nov 25, 2024 - Jupyter Notebook
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