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DISC-IISR / RNAseqAnalysis

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The package RNAseqAnalysis does the complete analysis of RNA seq data starting from raw reads. It provides the user with differnt functions like generation of qc report, filtering, assembly and GO-term annotation, differential expression analysis and heatmap generation, and Alternative splicing-site prediction

assembly alternative-splicing trimming transcriptome rna-seq-analysis differential-gene-expression quality-check go-annotation
  • Updated Sep 21, 2018
  • R

GiatrasKon / Gastric-Cancer-scRNAseq-Analysis

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Recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.

python machine-learning bioinformatics clustering pca tsne umap spectral-clustering single-cell-rna-seq louvain-algorithm ward-linkage sc-rna-seq go-annotation scanpy gmm-clustering sc-rna-seq-analysis average-linkage leiden-algorithm gastric-cancer marker-gene-identification
  • Updated Nov 25, 2024
  • Jupyter Notebook

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