Disease Association Protein-Protein Link Evaluator (Broad hosted algorithm)

Genomic Identification of Significant Targets in Cancer

This is basic GenePattern module written in Python 3. It can be taken as a Template for future modules. (click 'Use this template' to get started)

GenePattern Hierarchical Clustering module.

UMap or TSNE validation plots

Wraps the AmpliconSuite-pipeline workflow to identify one or more connected genomic regions which have copy number amplifications.

This a GenePattern Javascript visualizer that creates a CLS file from a GCT file.

A configurable heat map viewer that provides users with several options for manipulating and visualizing array-based data

Salmon Alevin (single cell) quantification wrapper module for GenePattern.

Salmon quantification wrapper module for GenePattern.

Visualizes prediction results

Module for GSEA Julia Implementation

Imports data from the Gene Expression Omnibus (GEO)

This module will turn a TXT file into ComparativeMarkerSelectionViewer-compatible ODF file

Identify differentially expressed genes that can discriminate between distinct classes of samples.

HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'

Generate the signature subway and stream plots

Detect differentially expressed genes between pairs of trajectory branches

Actual creation of the Elastic Principa Graph in the STREAM scRNASeq Trajectory analysis, packaged as a GenePattern module