GenomeTools genome analysis system.
Python programs for processing GFF3 files
A genome visualization python package for comparative genomics
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
Convert sequence IDs between ucsc/refseq/genbank
The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
A web application for interactive visualization and exploratory data analysis of variant call matrices
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Genome annotation data analysis and management implemented in pure Python
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
cool BED-to-GFF3 converter that runs in parallel
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