Python implementation of Striped Smith-Waterman Algorithm

Needleman-Wunsch Algorithm for global alignment and local alignment

A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water

Rapid local alignment search by in silico PCR

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Global and Local Sequence Alignment

Sequence alignment methods implementation

A compilation of all the programs in my bioinformatics course

transposon insertion site identified from raw fastq file and transposon sequences, using local alignment for identification.

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

Local and Global Alignment API

Fuzzy finder using Smith-Waterman algorithm

MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.

Algoritmos para el alineamiento de secuencias de ADN

Rapid and sensitive local alignment of genomic sequences employing motif anchors

Implementation of the FASTA algorithm from bioinformatics

Extensions for the dtw package in R

I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.